NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_016003

Scaffold Ga0310127_016003


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_016003 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4889
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F014844Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_016003_1657_1836F014844N/AMLIGYGYGYPTNQLLGGVSDPALTAWAAFNNRATADGATAAEAAVNACLFVRFAAIFNF
Ga0310127_016003_1838_2113F001129N/AMPTPILQQMLGQGGSMEFVDGSVTGKNYDFLVVNAATEFSALTGTNSEDLLTAYALSGKTVSAGIVISGRNGGKIIAVDVSSGSVIGYTFL
Ga0310127_016003_2142_2645F000847N/AMSWIKIKQALLDLANAHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSATTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISSLTNDPSEEWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYGHSVCEIPT
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