NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310127_015657

Scaffold Ga0310127_015657


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_015657 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4975
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F001807Metagenome / Metatranscriptome631Y
F007026Metagenome359Y
F020342Metagenome / Metatranscriptome224Y
F091979Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_015657_1592_1789F001120N/AMTRKSHISFDKTIAGFNVTEHGVKSYSKSIKLGPLQLTVNARESGVRGTISIPGTGLSLPNIKLF
Ga0310127_015657_1850_2035F020342N/AMSAYVNYLNMFDRINLAACAKRRATDNLLDATRWEGEYDTARLWMKYRLIKTTTHSYIDE
Ga0310127_015657_2035_2295F001807N/AMTVLAIEHTSFTDTHVTVTAVVDDMRLLYRATRFEPEEWAPALCTTTIELDPEEPIPLDEDGFCSYLDDLDPHWQLVDTSDYDLDS
Ga0310127_015657_330_557F091979AGGAMLLAGRYAMANSPFLQGWQQEYMKAHGSMPPQDKVMDFLTSVVRNESIPMQNKQAELRLLDQMQRFTPDVRNVVG
Ga0310127_015657_614_889F007026N/AMAYPEINWTKNEYKQLEQALDILKAVIERESKRHQMDEHLVPGDSDVVQEAIGLLEEIIDYDPTPNEPGEPPMTMNEMHSAAWKEHQEMRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.