| Basic Information | |
|---|---|
| Taxon OID | 3300034072 Open in IMG/M |
| Scaffold ID | Ga0310127_010587 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6655 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001322 | Metagenome | 722 | Y |
| F013317 | Metagenome / Metatranscriptome | 272 | Y |
| F019642 | Metagenome / Metatranscriptome | 228 | Y |
| F043835 | Metagenome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310127_010587_3723_3914 | F019642 | N/A | MPTEVAGFIASVLGSIGLLIAGLRYIIKLENLPLISRLDKLESTLETALRERVVSASAKKTRR |
| Ga0310127_010587_4296_4532 | F013317 | N/A | MIEKHKWEFLADIRARTGSRTLYINATPQGVYEFDLGALNEPEWVLKVLPTKTDFANSQKVEKPVGFLHIEESRLLLI |
| Ga0310127_010587_5558_6160 | F043835 | GGAGG | MSNYLDDYVGVQDRLRTFIKDFPDYRIKTHCLAESLVKECDVYIVKVELYRTEADPNPFATGLSTESKSKQYALELAETGALGRALNLAGYYAKPTTSKPFQSHSKPIQTTSKQLGEFVKERRPDDPAPIVHNIEHLIETLGAEIVDEVPICNHGAMVLKTGVKDGNEYRGWVCPARDRDAQCPAKWMKIDSDGKWVFKK |
| Ga0310127_010587_783_2030 | F001322 | AGGCGG | MTLWNPEYRIKVNGSTKTSATLSGLTITSGRIDIYSQPIAGYCNLTLIETNESAVDFEINDSVTVEVKDSTGTFVNLFGGFITDLTVQVQTSGSTATSQRINIIAVGALARLSRAVFEGNLASDYDGNQIYAVLEGILFDRWNEVPAATQWNTYAPTTQWQDAENTGLGEIDRPGDYELDSQNNLNDTAYNIAARLATSGLGYLYEDAQGRIGYADSTHRSQYLAANGYVDLDGNHAFGPGLAIIKRAGDVRNAITIAYTSSGNSTHTEEDAASIALYGQLATTISTTLKNQTDAEDQALFYLDLRAYPQFQLRQISFPVGSTEIDNTDRDSLLNVFMGMPVNITNLPGNMVNGEFQGFIEGWTWTASLGRLDLSMNVSPVAFSLQAFRWNSVPVTEYWNTLSNTLEWIDATIVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |