NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_003779

Scaffold Ga0310127_003779


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_003779 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14233
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050992Metagenome144N
F062576Metagenome130N
F066595Metagenome126N
F102810Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_003779_3043_3240F050992AGGMTEEIKQSLLNWESMGKNYSPTFNWTELNEIAIKSGNKPFNLGCSECRRQLLDYLLAIIKDGASK
Ga0310127_003779_3237_3458F066595N/AMIQLLATTYIIAKFIPKPIWLHRKPFTCPLCLTYWSFLIYQIINFTTYFDLITIPFTFALIASLFEQLNDRYL
Ga0310127_003779_623_1237F062576AGGMMTITLPTSWHDISIDKFPLIYDIVRDKDINPIDREIRVISILADIPVAEVERIRIDQLKELIKSVNFIFKMDFPKAVEMFKHNGYRWVVNYDVTKLSAGDFISLSKLTESEESIIGNLPQLVGMFVKPYKLKWLKLKEIEMEYSDKVEHIKSMNVGIVYPLCVFFCNVIKGLQPHIEDYLVKQMSEARAIVEKELSELKTKNI
Ga0310127_003779_8146_8649F102810N/AVIEELIKNKIYKQITRNICHNHELLEDLHSEAIIVIIEKQIDFSTIRNLRHYFSTVCWLTWHSNKFRKRYFVEHVTFVDNLNEIVEQNDNIDYSALISFLNDSPQTENEFYEQNLLKLYIQHGDAKKLSDKTKIPYRTVANDIKKIKEKLKRQHNEKNSNQSEHGEP
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