| Basic Information | |
|---|---|
| Taxon OID | 3300034072 Open in IMG/M |
| Scaffold ID | Ga0310127_002177 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20551 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (7.32%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.784 | Long. (o) | -98.26 | Alt. (m) | Depth (m) | 2896 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001640 | Metagenome / Metatranscriptome | 659 | Y |
| F004839 | Metagenome / Metatranscriptome | 421 | N |
| F010541 | Metagenome / Metatranscriptome | 302 | Y |
| F014956 | Metagenome / Metatranscriptome | 258 | Y |
| F021732 | Metagenome / Metatranscriptome | 217 | Y |
| F025505 | Metagenome / Metatranscriptome | 201 | N |
| F031483 | Metagenome | 182 | N |
| F041648 | Metagenome / Metatranscriptome | 159 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310127_002177_10009_10269 | F014956 | N/A | MINIQDFALNVSITVCPSHIVEPDHLKKWWRQRGVGELEKYFVSGKSIHYNEEINWNEISNHKKSLWYDSQNFQINMGHEYSKRQG |
| Ga0310127_002177_10244_10702 | F031483 | N/A | MNILKGRVKYTAGKIFEGQYGPSINAAITLDNGTDVRVYGKPDDNKLMALKKDDVVTIIHDGKSYKVAFDMVTANEIPEKVQTPTEGTNVQQAANVPPKNNGKLTHDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF |
| Ga0310127_002177_13440_13700 | F010541 | N/A | METKIFAVMYFGNAKRYQDLNYEIEAFTKREAVEKFYEKMRNEDYFPEDAFGGGIIRDCDGNIIADHTDETIEYDGGCFYAEPVIQ |
| Ga0310127_002177_14847_15374 | F004839 | N/A | MEKNFNNLQFKWTFESISDNIPTIMLLTIVLTYGINAYLTAIFLPIDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATLVALLEIFFGLQEKYEGGEFITMFLFIGTIVVFGYLLEINFVDKGVEAYGLIETKPKRKRKPRVKAEAKPVSKAKNFVSSFKTITL |
| Ga0310127_002177_17635_18237 | F001640 | N/A | MKNILFFLLIPFLALSQDVVTDTVYIQKQGDIYYIVTMTTFSDSTVTGNKQILGDSLTAIKALVTDAERQSNTIAIHAKPLILKGKSVKRINYYNNLHLQISGRPVYTSTALRDTSSFFGDWTLVFEGENIPGVIKLNANDRYIFNPDNGKVYTITTNLLLSTFTNQISFAFNGVRYDLYKFANGKFATVDNDVRLIKKE |
| Ga0310127_002177_8262_8996 | F025505 | N/A | MNNLPMIANRVEEKIQDVQLVIQNRELRIFKTGTKEAIPKIAQALSQLLPVYGIEPKPEHLMEVTEFISNYKLLAVDEIKLAFEKFAKQELDINDHKLYGKVDLHAIGRIITAYITWRQKIYFAMDSDLQAKKEEEERIKRLGKVAEEYDKDFDNKLKNFQKPLEEIPVFWYDECVKRGYINEWGEGEKEALWAEAQKMAKQEKPDSDNMIDRKNHMRKIEEGNMPRARALAYKLAVWRKVLLR |
| Ga0310127_002177_9343_9651 | F021732 | AGG | MALIPPFFHPQKLTKMNITKYTCKCTLDKKLGHFVHVIFSHGFGLYGQTSPHSPEDNIQIHGWTFEPHDIDLELYPPITSRNLMPLVAEHEMDWVILTNQSL |
| Ga0310127_002177_9662_10012 | F041648 | N/A | MEALKTTLTDNALTRYYEERIVYLEGENERLRNEARADFWIVLDFWIYSQRMIQAYVSWHNEAKHNHYLDCIKTMLETLEAHETRVLDTGINKLRIGVIEECKEAITKCQQITAAR |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |