NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310127_002099

Scaffold Ga0310127_002099


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_002099 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21031
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057997Metagenome135N
F068604Metagenome124N
F075863Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0310127_002099_13279_13881F057997N/AMENKKQTFKEVFSEMKELFKDIFQDEIKDLKFADYKAKDGSIIRTDTEEIAVGSKLQVITPDGVMDLPVEVTEMVIMVNEMPMKVYVENGVVKGIEPEEVMEDPVMEEMASDNNEQFEAKFAELNDRLSKLEAALGLSNQALEAANNSILAQTDLNRKLFSLIEKVADAPSVEPKSTSKENFKKAQPTSLEEFRKKVYNY
Ga0310127_002099_6131_6412F068604N/AMANALRLTANGGCEYIDNTNARTGKKYFCFIAQADTVVGTLTGGYAGDTTVNYLTSIGLGSKTLKQGAIIYAPDGAYFTNLTLTSGTIIAYSE
Ga0310127_002099_937_1176F075863N/AMKKTQSMAILDALLAGIVVNGSNAYAITKKECKCGTLNLHKLIAIIREKGYTVNEEWKTNPKTKTGYKEFSITNKKQKK
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