NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310127_000388

Scaffold Ga0310127_000388


Overview

Basic Information
Taxon OID3300034072 Open in IMG/M
Scaffold IDGa0310127_000388 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70092
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (84.69%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.784Long. (o)-98.26Alt. (m)Depth (m)2896
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020197Metagenome / Metatranscriptome225Y
F051070Metagenome / Metatranscriptome144Y
F054064Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0310127_000388_15083_15349F020197N/AMTSILLIRDIMTQDQNKPFSMGYVLRTTAKHMRKSIDISIRKTFERMPEFVNDQEKSKEVFQTLAFLHTMRKQLDDFQSANSENFKGE
Ga0310127_000388_15351_15656F054064AGGMSSNIKGLVGKKMTKTVKFIGEDVKITKLSVAEVLDIQDRAKVSNEDQESGFELLKKVIKMSVEGADELTDEDFNTFPMDELSKLSNEIMKFSGIAGEQGK
Ga0310127_000388_63128_63304F051070AGGAGMEAVTEAISKLWYLGAAIVAIAAYAVTIKVRLDYLEKNYDKQITALWDQINRLVKESK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.