NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334822_100833

Scaffold Ga0334822_100833


Overview

Basic Information
Taxon OID3300034070 Open in IMG/M
Scaffold IDGa0334822_100833 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 713 E-3-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0467Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025952Metagenome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0334822_100833_1_234F025952N/AGELTAATLVSVPLAGTVTVTVRLLTWPLANVPRLQLTTPLLLAPPPLALTNVTVAGNVSVTVTLLALEGPKFVTEIV
Ga0334822_100833_241_591F025952N/ALLEAKTLAGPVLPIATSATGVTVVMTGAVTLLVLLGSPVGVLTLAVFVNEPLAGAVTVTVTLLTWPLVSAPRLQLTTPLLLAPPPVAETKVTPSGNVSVTVTLLALEGPKFVTEIV

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