| Basic Information | |
|---|---|
| Taxon OID | 3300034068 Open in IMG/M |
| Scaffold ID | Ga0334990_0039267 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2530 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334990_0039267_1219_1431 | F000311 | GAG | MYFELTAPDRLSMERAYWDAQVIGLDPTALSPLTFNIGTGSIEKVSKIRDKYNLIESYTADYEPTGYTRR |
| Ga0334990_0039267_1433_1579 | F001043 | AGGAG | MSDYKDGFDDGYKFAREEIMEKLAEIDIMDIDSWVLDRISEMIEGGKL |
| Ga0334990_0039267_1784_2149 | F001125 | GGCGG | MGDRANFGFKDSKGDTIFLYGHWAGHGMLERLANAVSAAEPRWTDEAYATRICISRMIAEDWNQETGWGLSVNRILDNEHKIPVIDWSAQTFTLFEEDLTTEVFSLSLDKFCTKYSQPVM |
| Ga0334990_0039267_563_1219 | F003422 | N/A | MANVSGTWYNSRMKQNWFKYTYVCSICDALIEITNKTNVYSPYICCNIEAIWLSVVDATIHPTQTKEETMEETTTPAVPDTYNANLLVTYKVIHGYSDPEYATVKVASLEWDLHNARQTQKSNGVLHSKIDSVKDIITEAYADSDDQDTLRAIAEALGIELTREVEWSATIEVSGTISVDLLEGDADVEQEIYDNLYVDSQNGQIEIVDTEVTNVREN |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |