| Basic Information | |
|---|---|
| Taxon OID | 3300034068 Open in IMG/M |
| Scaffold ID | Ga0334990_0000979 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17014 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (31.25%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014261 | Metagenome | 264 | Y |
| F024551 | Metagenome | 205 | Y |
| F026860 | Metagenome | 196 | Y |
| F074557 | Metagenome / Metatranscriptome | 119 | Y |
| F097349 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334990_0000979_5651_5758 | F014261 | N/A | MKSLIALTFIIIFGWLAVVTFCGPELAHAINDLAR |
| Ga0334990_0000979_6076_6372 | F097349 | N/A | MKPKNIDDAGRLEACKELILEHRAKAGPKATYELYGILFGRKVELDRVDHAPTSGDFAPLIGKKRIASLFTAYDLVVEFRGNWKTDAEAKVVAWEAAQ |
| Ga0334990_0000979_6705_6962 | F024551 | N/A | MLIVKPDSLPRLWWLFPWSIARQLHKNAVALQFMADKTENENRLLRMEVVGLARSRDHWIAKHDRAYAVAMHNERVIADMEERSR |
| Ga0334990_0000979_8665_9138 | F074557 | AGG | MTLVLALSAALLSSEAIPEQTLQAVEQVESSGRGAKTPDGDAGKAIGCLQWHSSAWSDCSAIRRKAGLAVYPYSDAKAPIRARDYARTWLTVLKVRLAGQIGRQPYPGEIWLAWNLGWSGYERYGFSWAYVPRVKFDKARQVNTLAWGLPKRPAVAR |
| Ga0334990_0000979_9215_9709 | F026860 | N/A | MSTSSKLLSVLMAELNREPKDYPCPKGWTTVEQIREELSMAHTRNASSRALDLQRRGLLERQPHQFKSGTGQCHMAYVYRPVPPYKSIKEAADQMFVHRADKVPKGWVRLVDYAVNKNVSDVAVRGRVARAGLKPKYWKTPRGIIGLHLNAYYWKPDLDRLYKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |