NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0000767

Scaffold Ga0334990_0000767


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0000767 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19151
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006219Metagenome378Y
F036563Metagenome / Metatranscriptome169Y
F085388Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0000767_1184_1711F085388N/AMTNCCPNNNCVEIVPSGCVKYTGTPTTGGLIDSFDSCDPYLNDLLKLLDDKVVNLDVRVGLNKTAFDNANTACGLTSVISTTGLTVKDDKYYSSEVVLKLLGVICELRSRMNYLSAGDINTNKGNVYWENLPLSPDFIAFLKTKCLGDDPCGTGLPTDLGGLLRTIITKLCTCCP
Ga0334990_0000767_18477_19151F006219N/ASSTAKAAGKAKAEVAKPAILVTGDIVGIQTKADGSQDARGTASFTRVKGDGTASIGFSAEYMINAKIGNVSCVKSWIGANSKGVKHINVISDGLSLMPNAISNTALFVRVNSVKNFTALYGGAGTYGKLYGETMISTITIGGFMYKGKLTKHIDATVIMAGIYSPYSKYYTESLFKAKPIIIPFFNFTYKMTKTFGIGITGGGTYVANQDILNFQILMGAKLLL
Ga0334990_0000767_1867_2373F036563N/AMNVQLNIEALKAKNCSYLTIIDTSVYPLAPTSASIFIGVPGYDSAYEFVFLLGETNTYNSYSFGFTTSATSGFTELPDGVYSLVITTCPDTGVNSRHHLRTCKIDCRLATQWAKYVDCCDDEKMLYYLDKIEFLLKGAEAHADLCNPTKATELYKKADDLLRRLELDC
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