NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334990_0000281

Scaffold Ga0334990_0000281


Overview

Basic Information
Taxon OID3300034068 Open in IMG/M
Scaffold IDGa0334990_0000281 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31124
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (9.68%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032099Metagenome / Metatranscriptome181Y
F041778Metagenome159Y
F070121Metagenome123Y
F097343Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0334990_0000281_1353_1646F032099N/AMEDKRKNNGGHKTAGRKTKVEEAKVNNIFIQALKELYSKDTEEETKIAFVKNTLMDSQRGQLFIAEHIFGKPKEIIEATHNVNDFNIKDIFKVGNKS
Ga0334990_0000281_14411_14722F041778N/AMNIYKLNYLDKETAIKDFIEKGVFIEVEITDKEIFLSYGKGIQAVVEIGKIVLTNETEDENFKEFTAPVFADGYAYDIMSEQKIDFGKNEVFPKNPIHDFAGV
Ga0334990_0000281_6169_6303F070121N/AMKSKQSPLQRINRIIDFNWKRGNNKESVNEVYRKIINEKLAKKN
Ga0334990_0000281_9727_10014F097343N/AMQTTIKTHLEELQTSAARMLVLNSDNKMLISYFKDLTEKLLYLKELVNMDSKYNWIEIENLMLKLKEIDTELTHINIEIQIAEITTEKKSAYIKK
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