NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335019_0003459

Scaffold Ga0335019_0003459


Overview

Basic Information
Taxon OID3300034066 Open in IMG/M
Scaffold IDGa0335019_0003459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10569
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (75.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F004666Metagenome / Metatranscriptome428Y
F020171Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0335019_0003459_2987_3157F004666N/AMITKGSIDMTTKREFLKSKGITVGRRGRFSSAATKALQDAEDQGIKFTAELKAPKK
Ga0335019_0003459_4783_5052F020171GAGGMSDPHGTIGHYRKGGSIMAEQFIDTIAEHIIGAMQQEIGEDLFDQWSNKNLDEGVEYAEYEFMQYASPELKQQYNVYYGYVEGDEYYLC
Ga0335019_0003459_6109_6435F000450GGCGGMLGKLADAVIAARPRWNDSSYATRIAISQIVGDQWNAETGWGLHVNEIGDNEHKIAIIDWDQQTFSLHEWAPHNDLDNKVRGMKNDAIFTMDLSAFCEKYALEQILTV
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