Scaffold Ga0335019

Basic Information
Taxon OID	3300034066 Open in IMG/M
Scaffold ID	Ga0335019_0000230 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034066 Open in IMG/M

Scaffold ID

Ga0335019_0000230 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME11Jul2017-rr0087

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	36068
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (24.53%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (14.29%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

36068

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (24.53%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (14.29%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y
F080936	Metagenome	114	Y
F094990	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335019_0000230_14169_14510	F061575	N/A	MSVCSPCFDSGINVAACNAGIAFGVVTPETEYSVTITHNATKKVQSFVAESDVDGILTIVGAKIDALQGYTIGLKNCEKFTICEVEYDCISFSVVNMDVDEPETINLLECVSC
Ga0335019_0000230_1834_2745	F008936	AGGAG	MASFDSLVRDKIALFESVPEKLATAAQKTQAEIWRKIRPILEDMDVTAAGNIEQTEGNIRRIALISDELKKVLAGSEYREAVRAFLSSIDEGVQLTNEIARTFESAFEPTEVQKQLLQLSKQNAINTFFGAGLDARFTQPFLEQLTTNIAARSPLRETVAALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEIPTTRPFCEHREGEIFHRKEIEAWGDGKNSGGIRDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPDRKVPESVKARARAEGFYD
Ga0335019_0000230_24240_24869	F094990	N/A	MNSIAKITIPIEKLYQTINSAEVLSAQQIIERNSYEGVAYPIDNVMHYTAASNAIAEVNKAIKAIQDARKMVTGPLDAYKKELMRIESDAIMPLQSFIASTKNAMLEYNAACEKQFAAEQEKATTLESLVDNTAEVSIQHSHIKGIRTIRRTRINGEVDWMKVLSVLFGSGMYKPEDLTQNLLKAMEKCGVDSIAGIEIYEEKIQTITR
Ga0335019_0000230_26286_26930	F080936	N/A	MHKSNISTLSLLAICLFILLLLLRTCGALSESESNAMYLDSLNSEYTVRIARDSSRIHSQAVQLAKAGTKLRALELREPEVVVRYQTRTKVVTQVELGETVYIDSFPHLRLPRSFSREGKFLQIGGSINRLGRLQIDSIIIPVSYTVAIGDTLRGGLFSRKRDKVVRLGIDNPYVSVTGMHNVIVAQPPKKWYETKAFAFALGGITGFAIGRAK
Ga0335019_0000230_32469_33026	F030677	N/A	MATPAEIQKNLDILYEGWLSKFTPLYVAVRELKRIMFKRIFGTGSSGGTNTAGEKLPTKPYSTTPIYVSPRALASAPSRYKVGKRGEPIESLYFPGGYAELKKGTSRKLPLELTGKLKGGFLTSEVITEGLEAAITVPASELGKIEGLETKYGTIFLPTKEEQEAMLQDHAEELVQQIINAMNKS
Ga0335019_0000230_33028_34065	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYNNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTVIENKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVSYLNFYLADVNLAIASSNVNVPVLIFDMTTGKLIESLTYAEGALDQFIGKTLTSAKRKLDIAIVYESTMNTVKFTPKKGTCTSCGGGPKESHICPFVDAIGIELTTDGTNVLTSTSSKYTTGMSLTYSINCDRQGWMCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYGEELGAMLQNMRLPDDTHCWDCRKNMKYVTALP
Ga0335019_0000230_6183_6722	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAIIVGACGTELVNPSDEAAVDALLIAGTAKLIEDIRFALPAGSPVTVDSPIGCGTAIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWILAYMCDSGKVIYINPPVGITTSANFILPEQNNELQRYEVTFSWRDKNIPEQYDAPAGIFG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335019_0000230

Overview

Ecosystem & Geography

Associated Families

Sequences