NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0012903

Scaffold Ga0335001_0012903


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0012903 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4944
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002455Metagenome / Metatranscriptome557Y
F008235Metagenome / Metatranscriptome336N

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0012903_20_304F002455N/AMVAYLLDEGVLFVSSAISKHNGKDCLALYVLINDYFVPASDGEEVTYDELPKLYELYKERKHDGVSQFVADKRGIPNIYWKDKGSAFQKKLDLL
Ga0335001_0012903_3209_3583F008235N/AMINYLKNLSKKPETTPVEQPKNNYYLAKYRANVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKVYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNANIIIKDNDLYESTN
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