NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335001_0003882

Scaffold Ga0335001_0003882


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0003882 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8975
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F001322Metagenome722Y
F002241Metagenome / Metatranscriptome579Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0003882_1680_2924F001322N/AMTSWNPTYRVKVAGNTVTGATLSGLTITSGRTDIYTQPVAGYCNVTLIETSEAAVPFEINDAVTIEVQDSTATYVNLFGGFITDLGITVQTSGSTATSQQIRIVAVGALARLNRALYNGNFAHQFDGERIEELLSGVLFDQWNEVPTAETWAGYDPATQWQDAENTGLGEIDTPGDYELHSETGLNDTVYNLASRFATSGLGYLYEDAQGRIGYADSTHRSQYLATNGYVDLDGNHAIGPALSIVKRAGDVRNAITVGYGTGSANVTDQDAASISLYGQLATTISTTLRHQADAEDQAAFYLLIRAYPQFAFKQITFPLASSEIDNSDRDNLLNVFMGMPINIENLPLNMTNGEFQGFVEGWTWTASLGRLELTMNLSPIAFSLQAFRWNSVPAVETWNTISPTLDWLNATIVA
Ga0335001_0003882_7723_8070F000545N/AMKQDAHPFKCSSCLAVTPHIELYRYETSDIPEAPEEVWLIECQRCFLQRIIYPSDRVASKEDDITRCDKCGNWKMKSGKCRVCRLAAGFEQISVKYWTGNATMERPYNDEQTPLY
Ga0335001_0003882_8048_8239F002241AGGMSRPHSIKYIRQLMEWGFDKEFIARDCGINVSSLDVRLNRAKKREQDGNQRTESGTSSGESDS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.