NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0000297

Scaffold Ga0335001_0000297


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0000297 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28024
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F006660Metagenome367Y
F022651Metagenome / Metatranscriptome213Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0000297_13569_14219F006660GGAGMSFQTIVDIQQSMTVQNRRMVGQQVTRGGQIRTAQYLNAVPWVFTIVPHNYLYYPQVRDVIQTIDNLDRQLPANITFSSANLQWFTAYQGGLSLVQAAALTLASVPPANSQTITVGNLPAVGSTVVVFAAGDFLQLGSYVYKVTQQVLRGSGSTVSVNLHRPVIGTPSVGTLTAVGKDVYFPVYAEVCPIYSLTPMTNGAFVNWDQPFVFRENVAP
Ga0335001_0000297_19310_19729F024113N/ALVWNQQTYWNLAFTNCATGLPLSLVGATIDAQIVRRQVSNIVDTRNGLTFDIADYTPTPTPVSLTITNRVDAAGTCTLVINDATWSLINSDPQLEINAQDCVGFSGRVKVSFPASGSTPPDDAIIFLLFLVRSDGVVVV
Ga0335001_0000297_7644_7988F002997N/AMAIARFENITVNSLTFAKSDFGEQTTAITKWFGTRARIADVSNSLKISDRYRLYQDLVQMTLNYTPNVKQIVDRQDLYSFNWRGHDWRITDCREANDRMSVTFMCYRNDPVVAV
Ga0335001_0000297_9668_9904F022651AGAAGVTTIKNTNDLLTFLEGQAAQRQDWFGHKQQRMTAITLAHEIAARHADKMSPEDVVDYAMELNQRIFDKIIDPTRQGKK
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