NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335001_0000066

Scaffold Ga0335001_0000066


Overview

Basic Information
Taxon OID3300034064 Open in IMG/M
Scaffold IDGa0335001_0000066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55574
Total Scaffold Genes82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (75.61%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005294Metagenome405Y
F039525Metagenome163Y
F042295Metagenome158Y
F043830Metagenome155N
F073237Metagenome120Y
F085338Metagenome111Y
F090290Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335001_0000066_20130_20390F005294GAGMATILNTALVYDPRYHTFESWASLMVEQYAAQQLAIPDANTDWKEWASGLKAIDVFTNEGIPSPFIFDDWQEWAEALVNAVNPSVN
Ga0335001_0000066_29099_29326F043830GGAMNPYLNTDEIKEAFRKIYLEETHDFLEEDLEKLADGFIMAAMPAIVKTERDMCIKFVNSLNTNVARALGEYRENL
Ga0335001_0000066_32044_32253F073237GGAGMNLQDVLWYDTSKGRIGVLMVLDWHTEKLHYIMGVASGMNDNVDINHIYSGGMHLPDYVGAAFFFGDWE
Ga0335001_0000066_33039_33290F090290N/AVYADTAVKENQLEKHLPYTTKSGLRIGCMYSPPPENHMSHDAEIIQMALLGIESEYSERKVLGFVAYIIFLMVLFTVLFALEL
Ga0335001_0000066_34436_34858F042295AGGAGMSYASAKQRYAEKTTGFEDQPVSHNCFANGCPMAGGISTGGNWVCAYHHQATSDTWPRVTEALRDAEMVRVAINEVMKIDMISWGSAVNGYPPKWQEFAALFDNEPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKA
Ga0335001_0000066_34855_35073F085338GAGGMTKHDAQKILDEIRSGFGHAYTETCTLECLNLTGDLGAHGTVRSSGVDEPIREEGYRARLRQRAIMVARSKE
Ga0335001_0000066_39024_39203F039525GAGMSETNMSPYIKGFNAGVDCVLTEIERLEKIAPINLKQLLKHLDPQRDQKTAPKPDKGAP

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