Basic Information | |
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Taxon OID | 3300034064 Open in IMG/M |
Scaffold ID | Ga0335001_0000066 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 55574 |
Total Scaffold Genes | 82 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (75.61%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005294 | Metagenome | 405 | Y |
F039525 | Metagenome | 163 | Y |
F042295 | Metagenome | 158 | Y |
F043830 | Metagenome | 155 | N |
F073237 | Metagenome | 120 | Y |
F085338 | Metagenome | 111 | Y |
F090290 | Metagenome | 108 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335001_0000066_20130_20390 | F005294 | GAG | MATILNTALVYDPRYHTFESWASLMVEQYAAQQLAIPDANTDWKEWASGLKAIDVFTNEGIPSPFIFDDWQEWAEALVNAVNPSVN |
Ga0335001_0000066_29099_29326 | F043830 | GGA | MNPYLNTDEIKEAFRKIYLEETHDFLEEDLEKLADGFIMAAMPAIVKTERDMCIKFVNSLNTNVARALGEYRENL |
Ga0335001_0000066_32044_32253 | F073237 | GGAG | MNLQDVLWYDTSKGRIGVLMVLDWHTEKLHYIMGVASGMNDNVDINHIYSGGMHLPDYVGAAFFFGDWE |
Ga0335001_0000066_33039_33290 | F090290 | N/A | VYADTAVKENQLEKHLPYTTKSGLRIGCMYSPPPENHMSHDAEIIQMALLGIESEYSERKVLGFVAYIIFLMVLFTVLFALEL |
Ga0335001_0000066_34436_34858 | F042295 | AGGAG | MSYASAKQRYAEKTTGFEDQPVSHNCFANGCPMAGGISTGGNWVCAYHHQATSDTWPRVTEALRDAEMVRVAINEVMKIDMISWGSAVNGYPPKWQEFAALFDNEPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKA |
Ga0335001_0000066_34855_35073 | F085338 | GAGG | MTKHDAQKILDEIRSGFGHAYTETCTLECLNLTGDLGAHGTVRSSGVDEPIREEGYRARLRQRAIMVARSKE |
Ga0335001_0000066_39024_39203 | F039525 | GAG | MSETNMSPYIKGFNAGVDCVLTEIERLEKIAPINLKQLLKHLDPQRDQKTAPKPDKGAP |
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