NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335000_0081448

Scaffold Ga0335000_0081448


Overview

Basic Information
Taxon OID3300034063 Open in IMG/M
Scaffold IDGa0335000_0081448 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Oct2008D10-rr0053
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2244
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F004134Metagenome / Metatranscriptome451Y
F007919Metagenome / Metatranscriptome342Y

Sequences

Protein IDFamilyRBSSequence
Ga0335000_0081448_1100_1285F007919GGAGMTERVFFAQVSRVICPKTGIHYLDAIDVNGIHWLAQMETDVEKWITYKEFWYQDPQQPLD
Ga0335000_0081448_1469_1723F000919GAGGMRFRNIEFRWSKVNNKYELVRWHECEGKEYCYVIAFFDKDKECYNMRTIGDRFFEDKDAWVVGKYGLEFLNEIFQIEQDEEELK
Ga0335000_0081448_879_1103F004134N/AMTHPTSEWEWEETAEVAFQEWFHDLYGGFSLRSEYFFGDCEVEDVNTRKDLMTKWLHSAFLTGYNTGRCSKTDD
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