NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0210926

Scaffold Ga0334995_0210926


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0210926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1341
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F008808Metagenome327Y
F053144Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0210926_165_503F008808GGAMKNKINPCPECGQHFDNVFEAIDHLLEDDEEFDPALVLPNGYRLMIGSLLRCMYRYAEQPEQIRTITQDTYMTLFSAETDPGTVLEVIEDMIVGSSMVGIDDELKQLLEDGE
Ga0334995_0210926_2_175F053144N/AIFVFADGDGPGREFANSLARELPVTIVGFGDGEDVNSAYTKYGAGFIKEKMGLTNEE
Ga0334995_0210926_889_1299F001515N/AMTNKSSFDLDFGYGRKGEQLVDELLTGGRTVEVKRDRKWAKTNNLYIETECFFKKIEDWAPSGLGVTEAAYWAFVLEDSTLIVPTDALRYAVKEFGREITCNIPPNLSKGFLITVDDLMSATRLYKRAKADELATN
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