NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0065345

Scaffold Ga0334995_0065345


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0065345 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2889
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F006260Metagenome / Metatranscriptome377Y
F036669Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0065345_1686_1916F006260N/AMKKDLYMKNPNEKILVQRDDLKYDGKNIVIPSYYVNTILDYVKDWKLDGVPQVDIEDYQLFRNFLYDVQEYKNKGN
Ga0334995_0065345_1978_2532F036669N/ALPMPDEPKGYTGSHGFQTKDFDCALDIYIIDENGQLFIERRETEWVEGNPNAKGFLDKVGHIKTKKTWLESVNKTCTVQFYDFFSSNNTDYDYWIVYDAVFIDGKIKDIKLTTFEATANGERKKKDIEFHNKLREWDEFRKTRRYKYLLNPYNKILKFICDKIYKTLCFLSSRVWRVHNFLMIK
Ga0334995_0065345_2529_2774F001840N/AVKEEKDSEFLICDCYSHGLLVEKFDDEELCLSLFERGLNGRTLCWSERLRWCWQILKYGKPWSDFVILNTENQKKLKEFLK
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