NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0061040

Scaffold Ga0334995_0061040


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0061040 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3018
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006844Metagenome / Metatranscriptome363Y
F007112Metagenome357Y
F044490Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0061040_1494_1652F006844AGGAGMAKWEVEVIFEPTGDYMNFVYETDNEDEDGIFNEISNQLSIVPDLVEKNEEE
Ga0334995_0061040_2115_2345F044490GAGMMRVRVLRASKEEKVAVAIGRLLSDFHLDLEKVGYYLAKALPHTVYRRALEVLASAEFQENEVEQNRIGYRNDRLY
Ga0334995_0061040_923_1483F007112AGGAGVHTLHYVAVEADDKQQAFDKVVVSLSREDGYTPADWSDWHVVGGGRWSTNAQKTNDFMGGYNDDPTDVLGFSEDKEKFQEVLTNVAKFKAEAVNRAIKQINTDRFISDLVDYASEGGRPGNHFDGNKLMNLYTIKEATNMLMGQWVPDSGFYDLHEHIAETTYLKERLDKPEQASLQYLVPVDFHF
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