NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0334995_0040379

Scaffold Ga0334995_0040379


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0040379 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3910
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F046192Metagenome151Y
F065721Metagenome / Metatranscriptome127Y
F075658Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0040379_1087_1293F065721AGGAGMTKYIANENGDWWEVVEGESLYLIDTANPDITRAMEEEDTNPYQDKFEYFIQQYGVKVGLNIGEEVKV
Ga0334995_0040379_1_114F075658GAGGMSNVVELRNGSVKRIIFYEVADQQNIAIWGGESALEAL
Ga0334995_0040379_2884_3141F046192AGAAGGMAKVIKTTTLLADKSGAVWVEAQLSEAQVKRVINSYKRAGIILTPYGSPNQVIKQVEEISAFFANDNRSRSFAEAGKLQVIGVGF
Ga0334995_0040379_642_917F006618GAGMKQHLESEVVITHSNEENTGWKRYISFDYQGNNYELTLYWGEFDGYDIVWRFCDGKQMIHTPAWVVEWDEEAHNGDSFESYLDGLTWERIK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.