NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334995_0025976

Scaffold Ga0334995_0025976


Overview

Basic Information
Taxon OID3300034062 Open in IMG/M
Scaffold IDGa0334995_0025976 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5116
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0334995_0025976_1571_2176F004838N/AMITAQDKILHVANKLGLTSLKDMQASTGAVYDVDTDLAGQIFSSATRHQNPSVTNLNDNQFEVNEALLVENIAFYVKDGSGFVQNFQKIYGSNAVIVFDLIIGNKRVMKDTPVFAAGSPYTFANVATSNIASGESLATTFAPRHQVFMEGAGVLIPPQVQWYVDYRVFNVVTGATITPTDATAIGCYLFGTRVLLNFNTSI
Ga0334995_0025976_2176_2766F002287N/AMSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLTFFKTFQGLTQGQTNLTQNKLDSMESMVIKTIWLAQFATSGAESLFGVLAQQTLSIIVGNQTVVKNLPIQFNQGNSGQAFDRLHDNAGNASDATLVPTATEQIVMPVEIRLLTDIVIPPQVAFEVRIESNQGVYGSGAVVCALSGYGKIFSAGNSF
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