NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0340011

Scaffold Ga0334987_0340011


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0340011 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)976
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017472Metagenome240Y
F041166Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0340011_378_974F017472GGCGGMARKKGSDDFGWQGHQPKKSKFGFSSFEGASKAYQLDTPMPFKRKFRPDFNLKDFSILFDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGIGAALPGICYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYAIKSVTKTSDTVYAIELSSNFGPPISFFTGEILSDRFKSDGTEKTTYNNYTVIGVGNGTT
Ga0334987_0340011_3_374F041166N/ALVSSEGYPDNGGVRAAAFGVYVYAPNQAAPSTSTPLLVGKFQVGLSGSTEGVIQRIELPATVAPTPQTGNTNLIYPIERGKSEAMYLEKGYILCIGYLGNGPAAVSGGLSSSGVFIMAQGGFY
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