| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0026608 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5114 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000962 | Metagenome / Metatranscriptome | 820 | Y |
| F012669 | Metagenome / Metatranscriptome | 278 | Y |
| F028145 | Metagenome / Metatranscriptome | 192 | N |
| F045700 | Metagenome / Metatranscriptome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0026608_1965_2483 | F012669 | N/A | MSEQTYMKLKDAVKRPVFDAKTINRENPRFKSLVDSYQKWNQDDYFTEHRSTYENDIIKCLCHYNLDGFALAKYLSECKYIEPDSELVHILEDVSFVKSSLEIEIQIQWVKENFLTIPDNVVGKNVNVKQGIRKYENHYITGIKPETYQVTVSDKIDKNGGYIVGFENVTFL |
| Ga0334987_0026608_2828_3025 | F000962 | AGG | MNAHVPEEIKAKYPHMEFRGKQRQLNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDWKLKKI |
| Ga0334987_0026608_2997_3236 | F045700 | GGA | MNIRPSQCFECETGTYKDVTVNYFSQLSGGRSLVTKDVTIQRCDTCGAEILDSNASKIIESNIERNFPGYYERSRSRRN |
| Ga0334987_0026608_3233_3403 | F028145 | N/A | MKIFLVFFINLTVSLLSSILLYKLFKVDVSPTIISIGLIVVYMCLPQRFHDWIAEK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |