| Basic Information | |
|---|---|
| Taxon OID | 3300034061 Open in IMG/M |
| Scaffold ID | Ga0334987_0020702 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5912 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (18.75%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019119 | Metagenome / Metatranscriptome | 231 | N |
| F037129 | Metagenome / Metatranscriptome | 168 | Y |
| F077051 | Metagenome / Metatranscriptome | 117 | Y |
| F077197 | Metagenome / Metatranscriptome | 117 | N |
| F082372 | Metagenome / Metatranscriptome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334987_0020702_2110_2421 | F077197 | AGAAGG | MFLPIEFKDEQGPYIEHLNVTHITRISFVNPRNPDAGSKIHLRTGEILKTTMPFDLLSKEIDEAWESGSILILSAMLSEKAKLMKQSDLQNSGIEELDPLSEV |
| Ga0334987_0020702_2357_2611 | F077051 | N/A | MTENELTGLGFNKVEVNDLESQNGYDYYYYTLDIFNNLTLISVDNDRVQDENWYVYNLDWPDQFRLQTKDQVLQFLSSVGHFVS |
| Ga0334987_0020702_2758_3219 | F019119 | N/A | MKSFLGIPSDTSFKMEKKIMDEMLALSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRVKEHGEYSKVNKAYTKIAKDYPHEILNHEVFMKTMSPANG |
| Ga0334987_0020702_4092_4271 | F037129 | N/A | MNVNKKDYKVVEVQNGYTTKYAVKKRIFWLFWKTIKNSAGFDMQYDTKRAAQSYINFLK |
| Ga0334987_0020702_4919_5089 | F082372 | N/A | MSEEQETGWISALIKCDLCGHESLSVHHESCDKLECANCGRMSHYEVLEYYTNEEL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |