NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0008705

Scaffold Ga0334987_0008705


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0008705 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9548
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (31.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F006697Metagenome / Metatranscriptome366Y
F019128Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0008705_2048_2401F019128GGAGMSAGKAALGGVAAAFLSNTVGKQLGDKYAPYTGLIGSVATSLFLKQPEIAAGMAGYAGAKIGQSLLGADSAIGALLAENSYNVSPSMYLQGYNTPGMAGEGIYASDYTLAGYDIPGL
Ga0334987_0008705_2436_2996F002259N/AMGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLTNVGANGNQFQVDEALLVEKIGFFVPSAADGISYTGLAFNGASVKFDLVIGNKTVIKDATCEVGGEQAFYSDGTVGSAVIDLEGVGILIPPQVEYYVVAKGFGTNNRVAGSLRLGCYLFGTGALLNFNTTI
Ga0334987_0008705_2999_3553F006697N/AMANQVNKLAYVDNKLGVSLPGQQTTRVIYDSVNAVAGQGFFEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIIGNFAGTPTPASLANHMNLNITVGNQVVVKDFDPSFNATNRGLAFDRLHSGFNDGTNIELRLLTDIVIPPQVNFKATLQLSDAANVILNDDVTIVLKGYGRIFSAGNSF
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