NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0001046

Scaffold Ga0334987_0001046


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0001046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26366
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (72.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001433Metagenome695Y
F015975Metagenome / Metatranscriptome250Y
F023061Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0001046_16459_16827F015975N/AMSSYPVTKISCVANLFSRMMHFQKKGDKENGHSHVFNHLTLLAKGSLEVTVDGRVTVFNAPHMIYIKKDKLHELVALEDDTIAFCIHALRDGEGVDDILDPDSIPEGTDLLEIAKNIIRKPE
Ga0334987_0001046_20066_20677F001433N/AMAGKLNADDTLTKVLAYVDSPFKLFAIVLMAVFAFTGYIIYDHKELIVGTYKESQKLPSINKDRVDEVAVHLFKTTDATVVTIFKVNPLLATRIQYRAYTTNGRDKTNDGLDVGLFTSNQKNNEDVVALMAGNIPCGEYKTAQSEIGLWYLEKGMRYGCRISVPPDPSKFVGQITVGWEKQPADLEQTRAMLFIAATMLSRKK
Ga0334987_0001046_2911_3099F023061AGGAGMDASDVLVQALDKEVTGKRDWIASGQAKDYADYQRICGEIHGLLIARQEILDLKQKMENSDE
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