Basic Information | |
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Taxon OID | 3300034061 Open in IMG/M |
Scaffold ID | Ga0334987_0000951 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 27529 |
Total Scaffold Genes | 35 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (68.57%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F024291 | Metagenome / Metatranscriptome | 206 | Y |
F032198 | Metagenome | 180 | Y |
F047555 | Metagenome | 149 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0334987_0000951_10882_11217 | F024291 | AGGAGG | MAGVSAQGLTFTFGGSNLTVTSVQVSDTQDLVDGSHLGIAPGGRREFVGGFATEREVTIDYISTNVLAAGTSGSLSISGPMSFSGAATLASASIGGSVGALISGSATFRVA |
Ga0334987_0000951_12336_12596 | F032198 | N/A | MSVKRLLREVDSEEIAEWYAYDQRHPLPDSWAQTARICRIIMAASGNYKKGDIPDEAVFIPTTVKQEQSQAQILNELMKLNQPRQG |
Ga0334987_0000951_8378_8866 | F047555 | GGAGG | MSLTASVLATVSARLQSRQGLATAFTEQPIEFSFDVGDCTKVWSDRRTFASVGYDEVDFATVGIGTVKLLCIKNLSKTSQIALSAGWTGSQFSVFRQDVTSWNFSPMINLGSLTLRGYPIREGGAMLLSCPNSSGFATTSGGSILRIGGTGGQNYEIYVMGN |
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