NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334987_0000003

Scaffold Ga0334987_0000003


Overview

Basic Information
Taxon OID3300034061 Open in IMG/M
Scaffold IDGa0334987_0000003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)260747
Total Scaffold Genes250 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)76 (30.40%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F009382Metagenome / Metatranscriptome318Y
F009453Metagenome / Metatranscriptome317Y
F010014Metagenome309Y
F010748Metagenome / Metatranscriptome299Y
F014361Metagenome / Metatranscriptome263Y
F015306Metagenome255Y
F016120Metagenome / Metatranscriptome249Y
F046855Metagenome / Metatranscriptome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0334987_0000003_105112_105714F009453N/AMATAGTLLSDLDGKAPVFSNKDDDLVNKILADMNIPSSSNPVMNAPPPPSGNGSRMIQSPNPNTTYPMATDPATATAHMIGKDYPSAADFANLMHSPSYGHSGSQYASVGQPMAAPPVLLEPTKGNIYSDIMSQMKQPLLVAIIIFLVSLPIINVLIGHYLPSLLRLSGELTTAGMAVKSLVGGFLFWFIQKILVPLMVV
Ga0334987_0000003_116535_117506F015306N/AMNQSIHSTTPQFEKKKVARFHRLDNEHILAIESLYKTHPFLKDRVEIHMPFHRVKPTFQSGTVWMWPKFDKRPVGYLIFMDGFAPCIWYPERQEGMTFRWLLPPTFCQKGATVCLANILAGESLLQIEDLLVHQGTDLWSHQPFSERWLSLLTFWNSLPPDQPLLAFQPRLVQPIALSDWHLHYNPAIYWIIQPDHMRQARWYWKDVITVPEHRAVEFIAPILKRSKEMAQLLCAYCIPYAKMVLPDTYSLLSQEGNSLGMASIPTLLLSLELRGLFSDKTNGLTGIPVEVEWNAAFQKYQVVRVLPQETPITTEAFFHHMRS
Ga0334987_0000003_140713_141279F009382N/AMAELHQIGFSQNTYPNLFTAPEFGTEYLAARNVYVPPVQDVYPARDDRYPAYAGKMQDGRLVTDYRPKCSKNIRPNDQYYTKAWMVHHADEMMDESRRRQVEWSGASLPLANTVPPPAQIVHSNPFYSEMSATNLKYGIGMERADATAPMLFGTFQYEPTMSEIRNNRKNIDLTSRQEGGRNSVRGVF
Ga0334987_0000003_145293_145907F046855N/AMSLPAAFAGQQASTLLAMSPIEGFLQIFNNNPYFIGLMMLILNLGGRFISLEVTKKQEQFLQHPWVRRVLIFTVLFVATRSIWVAFWSTLIFVLFLGYLFNENSSLCIFGAGGSPGSTCADGPKPGEEMTPEEKEILHRLSAKAQRYQTADQTKKKMNRPDQDALEKSLRYVPTGSTVNEDGDPINDDVLHTDIYSANLSLLRR
Ga0334987_0000003_156368_156901F010014AGAAGGMAQPVFPDQHTASSYNAFPHPQFITRTRRESNTFDSINARQFEHWQTDGKFGTNNRPDINKQAPFYDMQPSDSRMNSRSYRSQPRFDANSSRGAQNPYFDKYSVTDDSRNMTRELKASVYEDKNTGYVEESNKLLQRNFDNRWLNPTVAIQQATVAEELRPKMDDIRLFYHNKPADM
Ga0334987_0000003_201284_201571F010748GGAGMTSVLYSAGLNYQTGNPVRQEIMAVRREVDSLRKQLEILTEENLVYRKHLLKLSQKSEEGSSELTKDLMDLSSGSNAQNRREAGGGTVQGGGFRR
Ga0334987_0000003_27593_27976F016120N/AMSRQLPPVHRQSIAEATAEAESRTLDYQPAERAQYIRTMLRDIALWMSQGETKEMITERVPEFVEIYPELFKKIITRQDLSPIQTMLAMLDKMGQGQLSQHQASIQVGQKLVDRYVTPQLNGAAERK
Ga0334987_0000003_72053_72316F007255N/AMTPAWFPWIFVGGIVFIILSFISAKYKEKEYRPIQYLQDFISGSILIAFTGVLIPDIFPVLSLPSGMPQMSTDEMDLQVGPPRLIGR
Ga0334987_0000003_87703_88080F014361AGAAGMSVLNAFTTQMVHFFDELCNTFPEEKDLKMATEGIKGAKKINPRLILDLFVEYVYKDCSTAIYERNMHVIRRHMQDTVTTQFNDMLAALSIFDKHWDTMGTKNQDVIWQYLKVLCHLSEKASHAI
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