NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335024_0000782

Scaffold Ga0335024_0000782


Overview

Basic Information
Taxon OID3300034051 Open in IMG/M
Scaffold IDGa0335024_0000782 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13May2013-rr0097
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17500
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (73.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004362Metagenome / Metatranscriptome442Y
F057002Metagenome137Y
F063629Metagenome129N
F087962Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335024_0000782_11167_11574F004362N/AMESRLKNWAWYVSYGVVSPQPDTTCRSFEKNYIPELGNLYAESEPHYEPDHVDGDLIEQAIKGLPLELRRTLKMRYVSHPYASTGQLAHALRISPHRLEVDLENAKKRLQQELDKKTKSAHYTNLLKMQGQKDNG
Ga0335024_0000782_16986_17216F087962AGGMNRAERARNYLNDEFFVELLEAQKDLYKSYVFNSPEHDVEGRERALVKLRAIEDFEASLRSILQQADIEKKRFKVF
Ga0335024_0000782_1836_2279F057002AGGMMQSSRKRFSQSLHDQYDPPARKAVSEWMKMKWGLNCIPNPNEYGVDLIALRGENPVGFVEVEVRSWAYCHYPTIHIGQRKDKLFQQDLPVLFFALTQDLGHAYWCRADIAKKHPIIEVKNFEVPSGELFYDIPVKEFRYVCLTDQF
Ga0335024_0000782_5582_5767F063629AGGAGMEKTAFDNLMAEFGSIKNLCDKIGVKYVTAYAWKMRNGIPKKWHSAIIEASNGKLTAEHL
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