NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334927_005428

Scaffold Ga0334927_005428


Overview

Basic Information
Taxon OID3300034024 Open in IMG/M
Scaffold IDGa0334927_005428 Open in IMG/M
Source Dataset NameBiocrust microbial communities from Mojave Desert, California, United States - 23HNC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4358
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.3778Long. (o)-117.6098Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020517Metagenome223Y
F033742Metagenome176Y
F079676Metagenome / Metatranscriptome115Y
F081092Metagenome / Metatranscriptome114Y
F091480Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0334927_005428_1122_1334F020517GGAVSRDAKHYLVKRPNEIIAKRRSWNEVQAELLEKGTDADESMLFRGIVTEDGTEYRDMYADSRTQVTEHTA
Ga0334927_005428_1393_1635F091480GGAGMRDLHVYVEPAGAGARGQRAAFYSRRADGPFYRWLYAEGSGRWRYSRVNLDRLTLRMLCVAPWDAVPDALRNRLGEHYLE
Ga0334927_005428_3146_3388F033742GGAGGMYIYTIQAMPGQKAKFEGDTSIKYRVRRVNDSIAVTKKGRSEVIRENLEYDEAVALVNGFNSMEGKSQVIREEVARQKNE
Ga0334927_005428_314_544F079676GGAGMRSETLGPGAGIKAGDRVRARDGAYKGKVGTALRVVTSSDEGRTSRSVLVSFPAGGADYLDASALEKAEEGEAAGE
Ga0334927_005428_743_904F081092GGCGGVSGYEDFIERLEAALADAEGREDFLEYMEGLTSEGRAEILAEADRREAEAVVA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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