NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335002_0002033

Scaffold Ga0335002_0002033


Overview

Basic Information
Taxon OID3300034020 Open in IMG/M
Scaffold IDGa0335002_0002033 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17204
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015082Metagenome / Metatranscriptome257Y
F057371Metagenome / Metatranscriptome136Y
F080037Metagenome / Metatranscriptome115Y
F106141Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0335002_0002033_12880_13080F015082N/AMSESDIYWTFVTAIKYAGSFYQAMGIAGLAADPNNKRRILAAFPEMVATYGTASRLHQTMRAGVAA
Ga0335002_0002033_15158_15343F106141GAGGMTKTRAVFFQKDNERIVIWTNHIRWTVTDMAAGGTKRYTKQLAMALSASLMAEGYEATVH
Ga0335002_0002033_5377_5526F080037N/AMTQAMAYAHAIRDNAQDDGVPIPMELVASFQADYNNIIAALNEAHNLAS
Ga0335002_0002033_5531_5815F057371AGGMQEIKVRFEPADLTALDHQAAVAGTSRSAFIRNKALSLPVARLNTVEYHALVADAVGAMRGDLPRQQVEYLVAYVITRLDKHQRQAVAGHQPLA
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