NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334985_0000066

Scaffold Ga0334985_0000066


Overview

Basic Information
Taxon OID3300034018 Open in IMG/M
Scaffold IDGa0334985_0000066 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)64603
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)74 (80.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023296Metagenome / Metatranscriptome210Y
F034897Metagenome / Metatranscriptome173Y
F045610Metagenome152Y
F067395Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0334985_0000066_24318_24503F045610AGGAGMKHEDIKKDMPMMAKVAAKAVKGHEKRMHKMAKGGVTRADGCVSKGHTKGKMIAMKSGGM
Ga0334985_0000066_27286_27468F034897AGGAGMGYKKAADGVAKKGKTDTKIYPNSGPSVVDKGPKASTSSLNKNMKAMGRNLAKVANQRGR
Ga0334985_0000066_27468_27734F023296GAGGMAKYSMKKGGKEVGPAEVYAEPHTMSGKKVTAAESSVVKPGRNGINEMNVSVAGVSKGNYAPINPYGVGVMRGYGAATKGRKISGKMG
Ga0334985_0000066_46201_46614F067395N/AMKLTVQPVGIQYVHKIWPLVEELFEKANKHDTGDYTLDQIRGLLATGSWVLLVATDEENVIHGAASVSFYNMPNYRVGFITAMAGKAIVNEDVYGQVCSFIKANGATRVQCAARESAARLYKQVGMEERHIIMETKL
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