NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334991_0008825

Scaffold Ga0334991_0008825


Overview

Basic Information
Taxon OID3300034013 Open in IMG/M
Scaffold IDGa0334991_0008825 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6661
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004978Metagenome / Metatranscriptome416Y
F020008Metagenome / Metatranscriptome226Y
F022648Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0334991_0008825_1458_1682F022648AGGAGMIVHNVQVYPVYAGHINDHKVIREEEFNSREDALMWVGYYNQHEHWNQNDWAENGNGVVAVYTGMIDTETGENL
Ga0334991_0008825_3338_3592F004978AGGAGMITADTLEVLTDFGPQYLTRAAQDAGYRGPNFTSCKFLGITNGGQFCYMGVFQVEGGTDSTKVFLTYDHTEDKVFADVQLTDWA
Ga0334991_0008825_5057_5335F020008N/AMRYNNNLATKKVTKMGIYASTVNAYAESAARAQVYTMQNKLQSYGQTAQQLNVSSAKFRRDIETKKAKFIAKMQKDKIAKMQAEIAHLQATV
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