| Basic Information | |
|---|---|
| Taxon OID | 3300034013 Open in IMG/M |
| Scaffold ID | Ga0334991_0000191 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 65428 |
| Total Scaffold Genes | 92 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 78 (84.78%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009319 | Metagenome | 319 | Y |
| F020864 | Metagenome / Metatranscriptome | 221 | Y |
| F023061 | Metagenome | 211 | Y |
| F043287 | Metagenome | 156 | Y |
| F045610 | Metagenome | 152 | Y |
| F093219 | Metagenome / Metatranscriptome | 106 | Y |
| F102438 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334991_0000191_34547_34759 | F043287 | GGA | MIIEQQAKELSSDVTEVATKVEIYCPNCSRDVDEAELFNKVCNDCGADLSSPEQHVAVAVTSVPVIGITW |
| Ga0334991_0000191_44085_44270 | F020864 | AGGAG | MTFRKAADGVTKQGKTKGKNLGDSGPNVGIQTGKGSKGASTVTSASMKAVGRNMARANNQ |
| Ga0334991_0000191_46963_47148 | F045610 | AGG | MKHDDIKQDMPMMKKVAKQEVKAHEKSMHKMAKGGVTRADGCITKGHTKGKMISMKSGGM |
| Ga0334991_0000191_4749_5012 | F093219 | N/A | MVQMNNERSLAKEITEGFEALKSMRNNEPVAWTACLDCGKRVTGDSIHTCSPQLKTLTDEEIDAVWFSYKGDIKDFARAILRKAQEK |
| Ga0334991_0000191_53609_53803 | F023061 | AGG | MMDAFEALVDILDKEVIVKRDWVASGQAADYPEYRRICGEIHGLLIARQETIDLKRKMEHSDNE |
| Ga0334991_0000191_58851_58982 | F102438 | AGGA | MFDFTKQTKQFEELAKRIQEVNEFWINSVLTSTKEFFNTAKTK |
| Ga0334991_0000191_6993_7157 | F009319 | GGAG | MIETLVKPQPLDNDVAVVKILQLMGQLTPNDIAYVLRVSAQVYMAVREDKNNGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |