NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334986_0022452

Scaffold Ga0334986_0022452


Overview

Basic Information
Taxon OID3300034012 Open in IMG/M
Scaffold IDGa0334986_0022452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4277
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F030060Metagenome186N
F046893Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0334986_0022452_1828_2082F003049AGGAMKNAKQIIGCRKSKKGEDTKGLGMITFGKSSIDKTKYVLVDITYDDKAGKELYEAGMLALKHDPEAVIEYAIKKALAGMAKCKK
Ga0334986_0022452_2675_3187F030060N/AMTKGIIASESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDINQGDINTLSQQYPQGKFLCEKADSAFQMDAWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWFDSIGFECYQHDSVSFCAEISVIYGRLKC
Ga0334986_0022452_3938_4276F046893GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFEQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPET
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