| Basic Information | |
|---|---|
| Taxon OID | 3300034012 Open in IMG/M |
| Scaffold ID | Ga0334986_0000200 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Aug2017-rr0027 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51968 |
| Total Scaffold Genes | 69 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 61 (88.41%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000220 | Metagenome / Metatranscriptome | 1544 | Y |
| F001715 | Metagenome / Metatranscriptome | 647 | Y |
| F002405 | Metagenome | 562 | Y |
| F018367 | Metagenome / Metatranscriptome | 235 | Y |
| F031458 | Metagenome | 182 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334986_0000200_22942_23112 | F018367 | GAGG | VIDVASAQIPWPNTEQKIVLVCRVVLPNEKYGANEFLDKDGRVCRWVLEAKNDRPN |
| Ga0334986_0000200_23566_24183 | F000220 | AGG | VSEGTLNANSTLDKVLGYVDSPFKLAAILVMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLLKTTNATIVAVFKVNPMFGTRILYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ |
| Ga0334986_0000200_28944_29351 | F031458 | N/A | MPLHYIPPNQLLTVWDKAAPLLQKSIDIEPDFITIEQVEYAIRTGKMFLLVWDEPDVGITGAAAVEFIDYPRYRVGHGTLLGGKGVVKPHVLQELVAWMKANGATVAQCWCRDELVPMYKKMGMEETHHVMRMKL |
| Ga0334986_0000200_39417_39623 | F002405 | N/A | MTPNQIAEPKWIFPFQGMAVGESFFIPTLRFAEMIYAIDSGAKRADIRVKCYITSKDKHIGVRAWRVR |
| Ga0334986_0000200_412_999 | F001715 | GGAG | MDDIEIVPPIEENIPLPESAKEAFPELTVTQELEMRANVVKLMSDLTGQPISPTQDNANEAKEIAKRMITDPASRPDFASYPNETLAYLAGMVAQMNVSIVSELSELKMYVVNKLVAEIEASKDPKVRVAALGKLGEIDGVDAFKKRTETTIKIQSLEEVEKELLETLSSIEDKVIDVEAREVVRNNAPNSETNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |