NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334979_0045924

Scaffold Ga0334979_0045924


Overview

Basic Information
Taxon OID3300033996 Open in IMG/M
Scaffold IDGa0334979_0045924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2850
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F030094Metagenome / Metatranscriptome186Y
F081267Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0334979_0045924_2_190F030094N/APQAEWDKYLEEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVEVEIN
Ga0334979_0045924_478_762F081267N/AVWQGRVSNGLRRSGSMSYEYHWVVVYDEDWGAFMVDVETTIMNMAEHPGLVYNKTTGRWEDELEEGSELEAEYNRLEEILAYQLTRLDIPKKTG
Ga0334979_0045924_772_1203F007525AGGAMKTYEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYEDRVVEVERGGEMHLTIPNLVNGELTDEYGVIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEVYDTFYDAVDAGIDHILDDRNW
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