| Basic Information | |
|---|---|
| Taxon OID | 3300033996 Open in IMG/M |
| Scaffold ID | Ga0334979_0014604 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5347 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (88.24%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F035281 | Metagenome / Metatranscriptome | 172 | Y |
| F036210 | Metagenome / Metatranscriptome | 170 | Y |
| F061803 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334979_0014604_1936_2151 | F035281 | AGGAG | MMKFAFVFALMVLGSSAYAGECSTGSCTLRSRVVNVTREVIAVPVTVTRRTVEATRNVGRKTVARVRSVVR |
| Ga0334979_0014604_2952_3215 | F036210 | GAGG | MKVRYISEVNRKEIQRKYIDQILGELDFMQIKDRLRDYLSKDKDKSSNYSLESEIRKEAPEVLVENWEDFDQPATLAKKRKEGFHHA |
| Ga0334979_0014604_4142_4285 | F061803 | GGAG | MQIDINKQEAWKLMDAVQAYLKDYTLTAQANKTFDTITKKLKEVVKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |