Basic Information | |
---|---|
Taxon OID | 3300033995 Open in IMG/M |
Scaffold ID | Ga0335003_0022387 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23May2014-rr0056 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3402 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001298 | Metagenome / Metatranscriptome | 727 | Y |
F092032 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335003_0022387_1235_1612 | F001298 | AGG | MSLFAEFLPDAKEMVADFPVAGTANSGAITFSCLISDPAMQTVLESGGYMERTQYSVRLPAATASWSLPDGSTGASTAIISGGLPIASLGQGKKIVVGGKTVRIITQTYKPASAWLTLIVIDDNQ |
Ga0335003_0022387_3039_3401 | F092032 | AGG | MCAAVNTGTVCLYGIGAGQQASLFVQSYTVSSGFNNTGMVVDETGRTITARYDDRRSEITVEGVANASSIPALGATLSFTVKTASAYPGGSASVSFSGVITKVDDRGSSKGFVTVSLTAE |
⦗Top⦘ |