NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0132306

Scaffold Ga0334996_0132306


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0132306 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1411
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009071Metagenome / Metatranscriptome323Y
F024290Metagenome / Metatranscriptome206Y
F036765Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0132306_235_429F009071GGAMPFFPDCYDEWGLYKITYDGDHKMYEMLFEGTEEECRQYAYDNYTDKQQGEMCLMDWEGRDWQV
Ga0334996_0132306_2_238F024290GAGMTLEEILEEYGQDVLDTYYELFPDKDISKFPDRFCGPVGEYADFVLDCYYSTGSNELDESIESFESGVFQEYYYYDHKT
Ga0334996_0132306_889_1215F036765AGGAGMTIKATELLKLFTKAKQLDLSVEVREDKDGDYVIRIYEMFRQENFDEKMFITQKGESNCNKASYTIDGMMDVLDGLLEEKRQEKIKEQKRQELIARLTDEEKDLLGVK
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