NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0026326

Scaffold Ga0334996_0026326


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0026326 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3748
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (56.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008943Metagenome / Metatranscriptome325Y
F037700Metagenome / Metatranscriptome167Y
F101046Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0026326_1187_1411F008943N/AMKLDGFDWAILSIPIILTILIGTIAYDDQQERITFQQTYNKNLECRQSLKDQTVVRVNEICGTVPQIKDFTGGN
Ga0334996_0026326_146_364F037700N/AMKKYRIKKQTYGDTTKYFPQEKFLYSWYNIFAYEVYFDGGYDTLEEARKRLCEYCREPVVEYLNFDPNEDCK
Ga0334996_0026326_2589_2888F101046N/AMDFTDYGISLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQSNEQFKDVSAQFAADFDEDNLPPQYSFGECYLYKCDTCKGVGYVPISGY
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