NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0022223

Scaffold Ga0334996_0022223


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0022223 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4115
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008496Metagenome / Metatranscriptome332Y
F082675Metagenome / Metatranscriptome113N
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0022223_3367_3549F093864GGAGMYNYNVEFVLEAMVMITSVSFDEPDLSDEFIIEEARQNILSYYKIDPEVMHLQDVIVHEV
Ga0334996_0022223_3679_3903F082675AGGAGMSNQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKQSGKWEYLEEDTEQEAEYYRLEEILAYNITRLDLTKKV
Ga0334996_0022223_792_1301F008496AGGAGVEFTTSEPTFGIPATITPMSEQVAVTPAYDPKATILVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQETNNRNSRAQDKLKDYLVENFDEIGEEHATEIANIFGIDLSKEVEVEFNVTIKATVSIPVNEDASDLSVYDFDITIESNESKYEIQEFDADIDSIDERY
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