| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0014276 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5237 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (58.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000919 | Metagenome / Metatranscriptome | 834 | Y |
| F014121 | Metagenome / Metatranscriptome | 265 | Y |
| F017818 | Metagenome / Metatranscriptome | 238 | Y |
| F018913 | Metagenome / Metatranscriptome | 232 | Y |
| F030059 | Metagenome / Metatranscriptome | 186 | Y |
| F032252 | Metagenome / Metatranscriptome | 180 | Y |
| F037722 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0014276_1988_2242 | F000919 | GGAGG | MRFRNIEFRWSKVNNKYELVKWYTHDSGDSCYVVAFFNKTTEGYDMETIGNRFFEDKDAWVVGKYGLEFLNEIFEIERIEEELK |
| Ga0334996_0014276_2239_2478 | F017818 | GAGG | MNKDAYYNWIDENDTYPEHSHKFFVALYTKYEGIEAIHRYFGTFDTREEAKVFAADYKDKYTKPGFISSVRVFPLCEVL |
| Ga0334996_0014276_2728_2877 | F037722 | N/A | MTNQEIGETIGFYIIVGVLGWALVSFFSLTWAQALIISWMYNKLIDVLQ |
| Ga0334996_0014276_3381_3617 | F018913 | N/A | MNEFNSNQQRAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSGTNKVDFTDELDVMFNAGWDECLKEIDAICDELELL |
| Ga0334996_0014276_3796_4005 | F014121 | GGAG | MMTNTASQIWETFKAELTQPATDDMKEALASSIRVISSIIHRDGVLENEPWHLHIAQELNEISYDVEAL |
| Ga0334996_0014276_4002_4169 | F032252 | GGAGG | MKLYRYKKDGHLYTLYEQLRPFYNLVAVPYFPNQGILSKSKRSISMNDFIVVAEQ |
| Ga0334996_0014276_4634_4963 | F030059 | GAGG | MNDTIKENLFQIQEVANKALEDHKNSTERFGGVNYADLRVVDVWVKYSIHEEDLEYGVLIEECSPTAYDFQDYMLEYLKDNLPNNLGWNGGLHTKKFGKETPSNLWTYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |