NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0012614

Scaffold Ga0334996_0012614


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0012614 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5597
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F000744Metagenome / Metatranscriptome909Y
F027765Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0012614_264_446F027765AGGAGMNDEDIEQFIKAYEDFMKHSETEQFNHEAWVAAKQYTDNFYEQKAAELEVTVDYYIQEFV
Ga0334996_0012614_3548_3943F000345GGAMMTEEKPLVNPEELQKPNNLGKALQEWWDSDACKQLQKDLEEGKQRAVGKYFMLSEEDKLDMVQAICYIMCKAEEEGTSHRGLQDALGIYPSGFWVDHLMEVHNALWSFYHDQKKEKELKDDLEALDDFVK
Ga0334996_0012614_849_1052F000744GGAMTETTVQLNVHEIGVILSALQELNLREENRIAREFGSVPALYNKLYTIWEQMDTSQTGLRYDVVPSF
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