NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334996_0002358

Scaffold Ga0334996_0002358


Overview

Basic Information
Taxon OID3300033994 Open in IMG/M
Scaffold IDGa0334996_0002358 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12897
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001561Metagenome / Metatranscriptome670Y
F013087Metagenome274Y
F033803Metagenome176N

Sequences

Protein IDFamilyRBSSequence
Ga0334996_0002358_11975_12313F013087N/AMEPTVWIYFSKTGTGYELKGSDVISGFDAFINMDGTYMVEYAFSDMKNSMHFFIYEWDNSQKKRRTVFEGYQRENVLVNFAKNVDVCHLVKQAIYKDYLITNDEEELERAIS
Ga0334996_0002358_12300_12812F001561AGGAGVQSREQKLVYLRKTIETLWHGVSDTKTGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAVRYYESAIRWKDAPSSTHHSLISVCDKAGDRVKAIGYCKMTLARFPNDPYTKSKLEVLTKL
Ga0334996_0002358_9260_9514F033803N/AMTINLRKNIARFIYILDQTTNIDSRAKVLKELDLTEAEFARLVGALLQFSNSNDKEWYCCNPEYHGYIETFKIISEKTDDEFLI
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