| Basic Information | |
|---|---|
| Taxon OID | 3300033994 Open in IMG/M |
| Scaffold ID | Ga0334996_0000357 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27723 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (84.91%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F002935 | Metagenome | 519 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F017829 | Metagenome / Metatranscriptome | 238 | Y |
| F023344 | Metagenome / Metatranscriptome | 210 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0334996_0000357_1818_2030 | F023344 | AGG | MEAFTDTVGEHILGAIQVDIEQHLFEQWNNANLEEGEAYAEYKFMQFAPDSLKQSYNEYYGYIEGDEFLL |
| Ga0334996_0000357_3691_3837 | F001043 | GGAG | MSDYRDGFDDGYKFGREELIEKLREIDISDIDSWLVDKLADMIEGNEI |
| Ga0334996_0000357_4051_4713 | F003422 | N/A | MTNELISSKYTFVCDPDECDSLIELTSSDGFGFPSGVMELTCPCGRKTTLLSVEHATIAPSNQTKEETMETTIGSDAFHSPAVEYNPDLLVTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKDIITEVYSDSDDQDTLRSIAEALGIELTRTVEFTATIEVSGTIDLNLLEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA |
| Ga0334996_0000357_4710_5135 | F002935 | GAGG | MSNRTKGYTGTIVDGKKLAEIANGIYNLQYSSDFSECTVDNLLFIELEEKNVFGDPKYALVCSEGVGWEQDTYGCLEVPTNIGQMGLWNGRVFISVDTVKSCLTNKTEDISDYIRVFGSRLDSNCSLWQSKMSVASGTLAI |
| Ga0334996_0000357_6596_6856 | F017829 | AGG | MANRFRVEIYDANKMNDITIYSDQGVDKEYLTELVFSNIRNFSGRVNAYVFDNVKKKKTTALFFDEKTVEKVNSITRGLKKMEFGL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |