NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334994_0100726

Scaffold Ga0334994_0100726


Overview

Basic Information
Taxon OID3300033993 Open in IMG/M
Scaffold IDGa0334994_0100726 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1697
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000722Metagenome / Metatranscriptome922Y
F027779Metagenome193Y
F041766Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0334994_0100726_1113_1409F000722N/AMDTLEPSEVTEEQYPETGITEETRRMYPETYSDKYNKVFKQFIDDIVRPNHIEPVKHDHEILIDELVIMYDAHMTIGGEQNRFNASVLKAAINVIRAL
Ga0334994_0100726_428_643F041766N/AMVEVPTIGVLIMAEPQVFIYEVGRCTLDNAQEVLIQIFRHSDTHKIIRAQMAFRNMAGDSWGVPTELDFQQ
Ga0334994_0100726_55_411F027779GGAGMRGSETSLSVHATGRAVDLSYRKTEQHPTANRKGAVGFLNIVIANANALGVECVLDYFPQKFGRGYRCDRQAWKSYSKPEIHGAPGGDWHHYEISPAMADSPALVKQAFQRVFAEIPQ
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